5 papers
LiME: Lightweight Mixture of Experts for Efficient Multimodal Multi-task Learning
Md Kowsher, Haris Mansoor, Nusrat Jahan Prottasha +4
MoE-PEFT methods combine Mixture of Experts with parameter-efficient fine-tuning for multi-task adaptation, but require separate adapters per expert causing trainable parameters to…
Breaking the Euclidean Barrier: Hyperboloid-Based Biological Sequence Analysis
Sarwan Ali, Haris Mansoor, Murray Patterson
Genomic sequence analysis plays a crucial role in various scientific and medical domains. Traditional machine-learning approaches often struggle to capture the complex relationship…
Computing Gram Matrix for SMILES Strings using RDKFingerprint and Sinkhorn-Knopp Algorithm
Sarwan Ali, Haris Mansoor, Prakash Chourasia +2
In molecular structure data, SMILES (Simplified Molecular Input Line Entry System) strings are used to analyze molecular structure design. Numerical feature representation of SMILE…
MIK: Modified Isolation Kernel for Biological Sequence Visualization, Classification, and Clustering
Sarwan Ali, Prakash Chourasia, Haris Mansoor +2
The t-Distributed Stochastic Neighbor Embedding (t-SNE) has emerged as a popular dimensionality reduction technique for visualizing high-dimensional data. It computes pairwise simi…
Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification Tasks
Sarwan Ali, Taslim Murad, Prakash Chourasia +4
Understanding the structural and functional characteristics of proteins are crucial for developing preventative and curative strategies that impact fields from drug discovery to po…