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q-bio.MN2026
Recurrent neural chemical reaction networks trained to switch dynamical behaviours through learned bifurcations
Alexander Dack, Tomislav Plesa, Thomas E. Ouldridge
Both natural and synthetic chemical systems not only exhibit a range of non-trivial dynamics, but also transition between qualitatively different dynamical behaviours as environmen…
q-bio.MN2025
Mapping dynamical systems into chemical reactions
Tomislav Plesa
Polynomial dynamical systems (DSs) can model a wide range of physical processes. A special subset of these DSs that can model chemical reactions under mass-action kinetics is calle…
q-bio.MN2025
Recurrent neural chemical reaction networks that approximate arbitrary dynamics
Alexander Dack, Benjamin Qureshi, Thomas E. Ouldridge +1
Many important phenomena in biochemistry and biology exploit dynamical features such as multi-stability, oscillations, and chaos. Construction of novel chemical systems with such r…