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Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae
Illes J. Farkas, Chuang Wu, Chakra Chennubhotla +2
BACKGROUND. Signal recognition and information processing is a fundamental cellular function, which in part involves comprehensive transcriptional regulatory (TR) mechanisms carrie…
CFinder: Locating cliques and overlapping modules in biological networks
Balazs Adamcsek, Gergely Palla, Illes J. Farkas +2
Summary: Most cellular tasks are performed not by individual proteins, but by groups of functionally associated proteins, often referred to as modules. In a protein assocation netw…
Initiating a Mexican wave: An instantaneous collective decision with both short and long range interactions
Illes J. Farkas, Tamas Vicsek
An interesting example for collective decision making is the so-called Mexican wave during which the spectators in a stadium leap to their feet with their arms up and then sit down…