4 papers
Are Vision Foundation Models Foundational for Electron Microscopy Image Segmentation?
Caterina Fuster-Barceló, Virginie Uhlmann
Although vision foundation models (VFMs) are increasingly reused for biomedical image analysis, it remains unclear whether the latent representations they provide are general enoug…
MIFA: Metadata, Incentives, Formats, and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis
Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur +24
Artificial Intelligence methods are powerful tools for biological image analysis and processing. High-quality annotated images are key to training and developing new methods, but a…
ShapeEmbed: a self-supervised learning framework for 2D contour quantification
Anna Foix Romero, Craig Russell, Alexander Krull +1
The shape of objects is an important source of visual information in a wide range of applications. One of the core challenges of shape quantification is to ensure that the extracte…
bia-binder: A web-native cloud compute service for the bioimage analysis community
Craig T. Russell, Jean-Marie Burel, Awais Athar +6
We introduce bia-binder (BioImage Archive Binder), an open-source, cloud-architectured, and web-based coding environment tailored to bioimage analysis that is freely accessible to…