7 citations · 12 across the 4 of their papers we have counts for
4 papers
Efficient Atlasing and Search of Configuration Spaces of Point-Sets Constrained by Distance Intervals
Aysegul Ozkan, Rahul Prabhu, Troy Baker +3
For configurations of point-sets that are pairwise constrained by distance intervals, the EASAL software implements a suite of algorithms that characterize the structure and geomet…
Best of Both Worlds: Uniform sampling in Cartesian and Cayley Molecular Assembly Configuration Space
Aysegul Ozkan, Meera Sitharam
EASAL (efficient atlasing and sampling of assembly landscapes) is a recently reported geometric method for representing, visualizing, sampling and computing integrals over the pote…
Fast and Flexible Geometric Method For Enhancing MC Sampling of Compact Configurations For Protein Docking Problem
Aysegul Ozkan, Jose C. Flores-Canales, Rahul Prabhu +2
EASAL (Efficient Atlasing and Sampling of Assembly Landscapes) is a geometric method for sampling and computing integrals over the potential energy landscape of small molecular ass…
Atlasing of Assembly Landscapes using Distance Geometry and Graph Rigidity
Rahul Prabhu, Meera Sitharam, Aysegul Ozkan +1
We describe a novel geometric methodology for analyzing free-energy and kinetics of assembly driven by short-range pair-potentials in an implicit solvent, and provides illustration…