63 citations · 82 across the 4 of their papers we have counts for
4 papers
Longitudinal Antigenic Sequences and Sites from Intra-Host Evolution (LASSIE) Identifies Immune-Selected HIV Variants
Peter Hraber, Bette Korber, Kshitij Wagh +16
Within-host genetic sequencing from samples collected over time provides a dynamic view of how viruses evade host immunity. Immune-driven mutations might stimulate neutralization b…
Using Sequence Alignments to Predict Protein Structure and Stability With High Accuracy
Alan Lapedes, Bertrand Giraud, Christopher Jarzynski
We present a sequence-based probabilistic formalism that directly addresses co-operative effects in networks of interacting positions in proteins, providing significantly improved…
Genetic Correlations in Mutation Processes
E. Ben-Naim, A. S. Lapedes
We study the role of phylogenetic trees on correlations in mutation processes. Generally, correlations decay exponentially with the generation number. We find that two distinct reg…
Identification of Continuous-Time Dynamical Systems: Neural Network Based Algorithms and Parallel Implementation
Robert M. Farber, Alan S. Lapedes, Ramiro Rico-Martínez +1
Time-delay mappings constructed using neural networks have proven successful in performing nonlinear system identification; however, because of their discrete nature, their use in…