254 citations · 1.6k across the 63 of their papers we have counts for
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cond-mat.soft2008★ 8 cited
A graph theoretical analysis of the energy landscape of model polymers
Marco Baiesi, Lorenzo Bongini, Lapo Casetti +1
In systems characterized by a rough potential energy landscape, local energetic minima and saddles define a network of metastable states whose topology strongly influences the dyna…
cond-mat.soft2008★ 7 cited
Stochastic dynamics of model proteins on a directed graph
L. Bongini, L. Casetti, R. Livi +2
A method for reconstructing the energy landscape of simple polypeptidic chains is described. We show that we can construct an equivalent representation of the energy landscape by a…
cond-mat.stat-mech2008★ 10 cited
Geometry of the energy landscape and folding transition in a simple model of a protein
Lorenzo N. Mazzoni, Lapo Casetti
A geometric analysis of the global properties of the energy landscape of a minimalistic model of a polypeptide is presented, which is based on the relation between dynamical trajec…