S. Cocco

activity

19962023

most citedInverse Statistical Physics of Protein Sequences: A Key Issues Review

265 citations · 2.3k across the 48 of their papers we have counts for

collaborators

Showing 2014Show all

2 papers · 1 filter

q-bio.BM2014★ 26 cited

Stochastic Ratchet Mechanisms for Replacement of Proteins Bound to DNA

Simona Cocco, John F. Marko, Remi Monasson

Experiments indicate that unbinding rates of proteins from DNA can depend on the concentration of proteins in nearby solution. Here we present a theory of multi-step replacement of…

q-bio.QM2014★ 29 cited

Large Pseudo-Counts and $L_{2}$ -Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models

J. P. Barton, S. Cocco, E. De Leonardis +1

Mean field (MF) approximation offers a simple, fast way to infer direct interactions between elements in a network of correlated variables, a common, computationally challenging pr…

Stochastic Ratchet Mechanisms for Replacement of Proteins Bound to DNA

Large Pseudo-Counts and L2​-Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models

Large Pseudo-Counts and $L_{2}$ -Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models