265 citations · 2.3k across the 48 of their papers we have counts for
3 papers · 1 filter
Transition paths in Potts-like energy landscapes: general properties and application to protein sequence models
Eugenio Mauri, Simona Cocco, Rémi Monasson
We study transition paths in energy landscapes over multi-categorical Potts configurations using the mean-field approach introduced by Mauri et al., {\em Phys Rev Lett 130, 158402…
Learning protein constitutive motifs from sequence data
Jérôme Tubiana, Simona Cocco, Rémi Monasson
Statistical analysis of evolutionary-related protein sequences provides insights about their structure, function, and history. We show that Restricted Boltzmann Machines (RBM), des…
Large Pseudo-Counts and -Norm Penalties Are Necessary for the Mean-Field Inference of Ising and Potts Models
J. P. Barton, S. Cocco, E. De Leonardis +1
Mean field (MF) approximation offers a simple, fast way to infer direct interactions between elements in a network of correlated variables, a common, computationally challenging pr…