10 citations · 14 across the 7 of their papers we have counts for
3 papers · 1 filter
Chemical Transformation Motifs - Modelling Pathways as Integer Hyperflows
Jakob L. Andersen, Christoph Flamm, Daniel Merkle +1
We present an elaborate framework for formally modelling pathways in chemical reaction networks on a mechanistic level. Networks are modelled mathematically as directed multi-hyper…
A Generic Framework for Engineering Graph Canonization Algorithms
Jakob L. Andersen, Daniel Merkle
The state-of-the-art tools for practical graph canonization are all based on the individualization-refinement paradigm, and their difference is primarily in the choice of heuristic…
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps
Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler +3
In the absence of horizontal gene transfer it is possible to reconstruct the history of gene families from empirically determined orthology relations, which are equivalent to event…