10 citations · 14 across the 6 of their papers we have counts for
3 papers · 1 filter
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps
Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler +3
In the absence of horizontal gene transfer it is possible to reconstruct the history of gene families from empirically determined orthology relations, which are equivalent to event…
Automatic Inference of Graph Transformation Rules Using the Cyclic Nature of Chemical Reactions
Christoph Flamm, Daniel Merkle, Peter F. Stadler +1
Graph transformation systems have the potential to be realistic models of chemistry, provided a comprehensive collection of reaction rules can be extracted from the body of chemica…
Inferring Chemical Reaction Patterns Using Rule Composition in Graph Grammars
Jakob L. Andersen, Christoph Flamm, Daniel Merkle +1
Modeling molecules as undirected graphs and chemical reactions as graph rewriting operations is a natural and convenient approach tom odeling chemistry. Graph grammar rules are mos…