30 citations · 53 across the 3 of their papers we have counts for
3 papers · 1 filter
Mechanical Unfolding of a Simple Model Protein Goes Beyond the Reach of One-Dimensional Descriptions
Rafael Tapia-Rojo, Sergio Arregui, Juan José Mazo +1
We study the mechanical unfolding of a simple model protein. The Langevin dynamics results are analyzed using Markov-model methods which allow to describe completely the configurat…
Mesoscopic Model for Free Energy Landscape Analysis of DNA sequences
R. Tapia-Rojo, D. Prada-Gracia, J. J. Mazo +1
A mesoscopic model which allows us to identify and quantify the strength of binding sites in DNA sequences is proposed. The model is based on the Peyrard-Bishop-Dauxois model for t…
Thermal and mechanical properties of a DNA model with solvation barrier
Rafael Tapia-Rojo, Juan J. Mazo, Fernando Falo
We study the thermal and mechanical behavior of DNA denaturation in the frame of the mesoscopic Peyrard- Bishop-Dauxois model with the inclusion of solvent interaction. By analyzin…