26 citations · 94 across the 7 of their papers we have counts for
7 papers
Rigidity-induced scale invariance in polymer ejection from capsid
Riku P. Linna, Pauli M. Suhonen, Joonas Piili
While the dynamics of a fully flexible polymer ejecting a capsid through a nanopore has been extensively studied, the ejection dynamics of semiflexible polymers has not been proper…
Quantification of tension to explain bias dependence of driven polymer translocation dynamics
P. M. Suhonen, J. Piili, R. P. Linna
Motivated by identifying the origin of the bias dependence of tension propagation we investigate methods for measuring tension propagation quantitatively in computer simulations of…
Uniform description of polymer ejection dynamics from capsid with and without hydrodynamics
Joonas Piili, Pauli M. Suhonen, Riku P. Linna
We use stochastic rotation dynamics to examine the dynamics of the ejection of an initially strongly confined flexible polymer from a spherical capsid with and without hydrodynamic…
Driven polymer translocation in good and bad solvent: effects of hydrodynamics and tension propagation
Jaakko E. Moisio, Joonas Piili, Riku P. Linna
We investigate the driven polymer translocation through a nanometer-scale pore in the presence and absence of hydrodynamics both in good and bad solvent. We present our results on…
Polymer ejection from strong spherical confinement
J. Piili, R. P. Linna
We examine the ejection of an initially strongly confined flexible polymer from a spherical capsid through a nanoscale pore. We use molecular dynamics for unprecedentedly high init…
Consistent inference of a general model using the pseudo-likelihood method
Alexander Mozeika, Onur Dikmen, Joonas Piili
Recently maximum pseudo-likelihood (MPL) inference method has been successfully applied to statistical physics models with intractable likelihoods. We use information theory to der…
Sedimentation of Knotted Polymers
Joonas Piili, Davide Marenduzzo, Kimmo Kaski +1
We investigate the sedimentation of knotted polymers by means of stochastic rotation dynamics, a molecular dynamics algorithm that takes hydrodynamics fully into account. We show t…