1 citations · 1 across the 2 of their papers we have counts for
5 papers
Dynamic Pooling Improves Nanopore Base Calling Accuracy
Vladimír Boža, Peter Perešíni, Broňa Brejová +1
In nanopore sequencing, electrical signal is measured as DNA molecules pass through the sequencing pores. Translating these signals into DNA bases (base calling) is a highly non-tr…
B.1.258, a SARS-CoV-2 variant with H69/V70 in the Spike protein circulating in the Czech Republic and Slovakia
Broňa Brejová, Viktória Hodorová, Kristína Boršová +7
SARS-CoV-2 mutants carrying the H69/V70 deletion in the amino terminal domain of the Spike protein emerged independently in at least six lineages of the virus (namely, B.1.1.…
Nanopore Base Calling on the Edge
Peter Perešíni, Vladimír Boža, Broňa Brejová +1
We developed a new base caller DeepNano-coral for nanopore sequencing, which is optimized to run on the Coral Edge Tensor Processing Unit, a small USB-attached hardware accelerator…
Using Sequence Ensembles for Seeding Alignments of MinION Sequencing Data
Rastislav Rabatin, Broňa Brejová, Tomáš Vinař
Oxford Nanopore MinION sequencer is currently the smallest sequencing device available. While being able to produce very long reads (reads of up to 100~kbp were reported), it is pr…
Sequence Annotation with HMMs: New Problems and Their Complexity
Michal Nánási, Tomáš Vinař, Broňa Brejová
Hidden Markov models (HMMs) and their variants were successfully used for several sequence annotation tasks. Traditionally, inference with HMMs is done using the Viterbi and poster…