212 citations · 505 across the 43 of their papers we have counts for
4 papers · 1 filter
Exploration and retrieval of whole-metagenome sequencing samples
Sohan Seth, Niko Välimäki, Samuel Kaski +1
Over the recent years, the field of whole metagenome shotgun sequencing has witnessed significant growth due to the high-throughput sequencing technologies that allow sequencing ge…
Fast Approximate Inference of Transcript Expression Levels from RNA-seq Data
James Hensman, Peter Glaus, Antti Honkela +1
Motivation: The mapping of RNA-seq reads to their transcripts of origin is a fundamental task in transcript expression estimation and differential expression scoring. Where ambigui…
Probe region expression estimation for RNA-seq data for improved microarray comparability
Karolis Uziela, Antti Honkela
Rapidly growing public gene expression databases contain a wealth of data for building an unprecedentedly detailed picture of human biology and disease. This data comes from many d…
Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data
Ciira wa Maina, Antti Honkela, Filomena Matarese +5
Gene transcription mediated by RNA polymerase II (pol-II) is a key step in gene expression. The dynamics of pol-II moving along the transcribed region influence the rate and timing…