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math.PR2025
The space of multifurcating ranked tree shapes: enumeration, lattice structure, and Markov chains
Julie Zhang, Noah A. Rosenberg, Julia A. Palacios
Coalescent models of bifurcating genealogies are used to infer evolutionary parameters from molecular data. However, there are many situations where bifurcating genealogies do not…
math.PR2020
An adjacent-swap Markov chain on coalescent trees
Mackenzie Simper, Julia A. Palacios
The standard coalescent is widely used in evolutionary biology and population genetics to model the ancestral history of a sample of molecular sequences as a rooted and ranked bina…