181 citations · 1.7k across the 107 of their papers we have counts for
4 papers · 1 filter
Differential Expression Analysis of Dynamical Sequencing Count Data with a Gamma Markov Chain
Ehsan Hajiramezanali, Siamak Zamani Dadaneh, Paul de Figueiredo +3
Next-generation sequencing (NGS) to profile temporal changes in living systems is gaining more attention for deriving better insights into the underlying biological mechanisms comp…
BayCount: A Bayesian Decomposition Method for Inferring Tumor Heterogeneity using RNA-Seq Counts
Fangzheng Xie, Mingyuan Zhou, Yanxun Xu
Tumor is heterogeneous - a tumor sample usually consists of a set of subclones with distinct transcriptional profiles and potentially different degrees of aggressiveness and respon…
BNP-Seq: Bayesian Nonparametric Differential Expression Analysis of Sequencing Count Data
Siamak Zamani Dadaneh, Xiaoning Qian, Mingyuan Zhou
We perform differential expression analysis of high-throughput sequencing count data under a Bayesian nonparametric framework, removing sophisticated ad-hoc pre-processing steps co…
Lognormal and Gamma Mixed Negative Binomial Regression
Mingyuan Zhou, Lingbo Li, David Dunson +1
In regression analysis of counts, a lack of simple and efficient algorithms for posterior computation has made Bayesian approaches appear unattractive and thus underdeveloped. We p…