155 citations · 839 across the 27 of their papers we have counts for
28 papers
Prediction of protein allosteric signalling pathways and functional residues through paths of optimised propensity
Nan Wu, Sophia N. Yaliraki, Mauricio Barahona
Allostery commonly refers to the mechanism that regulates protein activity through the binding of a molecule at a different, usually distal, site from the orthosteric site. The omn…
Sensitivity and spectral control of network lasers
Dhruv Saxena, Alexis Arnaudon, Oscar Cipolato +7
Recently, random lasing in complex networks has shown efficient lasing over more than 50 localised modes, promoted by multiple scattering over the underlying graph. If controlled,…
Graph-based Topic Extraction from Vector Embeddings of Text Documents: Application to a Corpus of News Articles
M. Tarik Altuncu, Sophia N. Yaliraki, Mauricio Barahona
Production of news content is growing at an astonishing rate. To help manage and monitor the sheer amount of text, there is an increasing need to develop efficient methods that can…
Data-driven modelling and characterisation of task completion sequences in online courses
Robert L. Peach, Sam F. Greenbury, Iain G. Johnston +3
The intrinsic temporality of learning demands the adoption of methodologies capable of exploiting time-series information. In this study we leverage the sequence data framework and…
Severability of mesoscale components and local time scales in dynamical networks
Yun William Yu, Jean-Charles Delvenne, Sophia N. Yaliraki +1
A major goal of dynamical systems theory is the search for simplified descriptions of the dynamics of a large number of interacting states. For overwhelmingly complex dynamical sys…
An edge-based formulation of elastic network models
Maxwell Hodges, Sophia N Yaliraki, Mauricio Barahona
We present an edge-based framework for the study of geometric elastic network models to model mechanical interactions in physical systems. We use a formulation in the edge space, i…