751 citations · 1.1k across the 4 of their papers we have counts for
Showing q-bio.QMShow all
2 papers · 1 filter
q-bio.QM2014★ 215 cited
Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences
Magnus Ekeberg, Tuomo Hartonen, Erik Aurell
Direct-Coupling Analysis is a group of methods to harvest information about coevolving residues in a protein family by learning a generative model in an exponential family from dat…
q-bio.QM2012★ 751 cited
Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models
Magnus Ekeberg, Cecilia Lövkvist, Yueheng Lan +2
Spatially proximate amino acids in a protein tend to coevolve. A protein's three-dimensional (3D) structure hence leaves an echo of correlations in the evolutionary record. Reverse…