13 citations · 16 across the 3 of their papers we have counts for
5 papers
Molecular simulation approaches to probing the effects of mechanical forces in the actin cytoskeleton
Fatemah Mukadum, Willmor J. Pena Ccoa, Glen M. Hocky
In this article we give our perspective on the successes and promise of various molecular and coarse-grained simulation approaches to probing the effect of mechanical forces in the…
A strong non-equilibrium bound for sorting of crosslinkers on growing biopolymers
Yuqing Qiu, Michael Nguyen, Glen M. Hocky +2
Understanding the role of non-equilibrium driving in self-organization is crucial for developing a predictive description of biological systems, yet it is impeded by their complexi…
A Minimal Experimental Bias on the Hydrogen Bond Greatly Improves Ab Initio Molecular Dynamics Simulations of Water
Paul B. Calio, Glen M. Hocky, Gregory A. Voth
Experiment Directed Simulations (EDS) is a method within a class of techniques seeking to improve molecular simulations by minimally biasing the system Hamiltonian to reproduce cer…
Infinite Switch Simulated Tempering in Force (FISST)
Michael J. Hartmann, Yuvraj Singh, Eric Vanden-Eijnden +1
Many proteins in cells are capable of sensing and responding to piconewton scale forces, a regime in which conformational changes are small but significant for biological processes…
A small subset of normal modes mimics the properties of dynamical heterogeneity in a model supercooled liquid
Glen M. Hocky, David R. Reichman
In this work, we study the nature of transitions between inherent structures of a two-dimensional model supercooled liquid. We demonstrate that these transitions occur predominatel…