117 citations · 132 across the 10 of their papers we have counts for
3 papers · 1 filter
piBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios
Filip Bielejec, Philippe Lemey, Luiz Max Carvalho +3
Background: Simulated nucleotide or amino acid sequences are frequently used to assess the performance of phylogenetic reconstruction methods. BEAST, a Bayesian statistical framewo…
Inferring Heterogeneous Evolutionary Processes Through Time: from sequence substitution to phylogeography
Filip Bielejec, Philippe Lemey, Guy Baele +2
Molecular phylogenetic and phylogeographic reconstructions generally assume time-homogeneous substitution processes. Motivated by computational convenience, this assumption sacrifi…
Integrating influenza antigenic dynamics with molecular evolution
Trevor Bedford, Marc A. Suchard, Philippe Lemey +7
Influenza viruses undergo continual antigenic evolution allowing mutant viruses to evade host immunity acquired to previous virus strains. Antigenic phenotype is often assessed thr…