3 papers
q-bio.QM2018
Reliable uncertainty estimate for antibiotic resistance classification with Stochastic Gradient Langevin Dynamics
Md-Nafiz Hamid, Iddo Friedberg
Antibiotic resistance monitoring is of paramount importance in the face of this on-going global epidemic. Deep learning models trained with traditional optimization algorithms (e.g…
q-bio.GN2015
An Event-Driven Approach for Studying Gene Block Evolution in Bacteria
David C Ream, Asma R Bankapur, Iddo Friedberg
Motivation: Gene blocks are genes co-located on the chromosome. In many cases, genes blocks are conserved between bacterial species, sometimes as operons, when genes are co-transcr…
q-bio.GN2012
Biological Database of Images and Genomes: tools for community annotations linking image and genomic information
Andrew T. Oberlin, Dominika A. Jurkovic, Mitchell F. Balish +1
Genomic data and biomedical imaging data are undergoing exponential growth. However, our understanding of the phenotype-genotype connection linking the two types of data is lagging…