activity
20122026
most citedKnowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

9 citations · 26 across the 10 of their papers we have counts for

collaborators

10 papers

cs.AI2026

Improving Interoperability among Defence and National Security Ontologies: Analysis and Evaluation Tasks

Jonathon Dilworth, Pedro Giesteira Cotovio, David Herron +4

The use of ontologies and knowledge graphs is becoming increasingly widespread in the defence and national security domain. Numerous ontologies have been developed through initiati…

cs.AI2025

CMOMgen: Complex Multi-Ontology Alignment via Pattern-Guided In-Context Learning

Marta Contreiras Silva, Daniel Faria, Catia Pesquita

Constructing comprehensive knowledge graphs requires the use of multiple ontologies in order to fully contextualize data into a domain. Ontology matching finds equivalences between…

cs.AI2023

What can knowledge graph alignment gain with Neuro-Symbolic learning approaches?

Pedro Giesteira Cotovio, Ernesto Jimenez-Ruiz, Catia Pesquita

Knowledge Graphs (KG) are the backbone of many data-intensive applications since they can represent data coupled with its meaning and context. Aligning KGs across different domains…

cs.AI2023★ 9 cited

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities

Jiaoyan Chen, Hang Dong, Janna Hastings +6

The term life sciences refers to the disciplines that study living organisms and life processes, and include chemistry, biology, medicine, and a range of other related disciplines.…

cs.AI2023

Biomedical Knowledge Graph Embeddings with Negative Statements

Rita T. Sousa, Sara Silva, Heiko Paulheim +1

A knowledge graph is a powerful representation of real-world entities and their relations. The vast majority of these relations are defined as positive statements, but the importan…

cs.AI2023★ 3 cited

Benchmark datasets for biomedical knowledge graphs with negative statements

Rita T. Sousa, Sara Silva, Catia Pesquita

Knowledge graphs represent facts about real-world entities. Most of these facts are defined as positive statements. The negative statements are scarce but highly relevant under the…

cs.LG2023

Explainable Representations for Relation Prediction in Knowledge Graphs

Rita T. Sousa, Sara Silva, Catia Pesquita

Knowledge graphs represent real-world entities and their relations in a semantically-rich structure supported by ontologies. Exploring this data with machine learning methods often…

cs.LG2021★ 7 cited

Predicting Gene-Disease Associations with Knowledge Graph Embeddings over Multiple Ontologies

Susana Nunes, Rita T. Sousa, Catia Pesquita

Ontology-based approaches for predicting gene-disease associations include the more classical semantic similarity methods and more recently knowledge graph embeddings. While semant…

cs.AI2013★ 5 cited

Ontology alignment repair through modularization and confidence-based heuristics

Emanuel Santos, Daniel Faria, Cátia Pesquita +1

Ontology Matching aims to find a set of semantic correspondences, called an alignment, between related ontologies. In recent years, there has been a growing interest in efficient a…

cs.IR2012★ 2 cited

Testing the AgreementMaker System in the Anatomy Task of OAEI 2012

Daniel Faria, Catia Pesquita, Emanuel Santos +3

The AgreementMaker system was the leading system in the anatomy task of the Ontology Alignment Evaluation Initiative (OAEI) competition in 2011. While AgreementMaker did not compet…