59 citations · 68 across the 6 of their papers we have counts for
6 papers
Progress on Constructing Phylogenetic Networks for Languages
Tandy Warnow, Steven N. Evans, Luay Nakhleh
In 2006, Warnow, Evans, Ringe, and Nakhleh proposed a stochastic model (hereafter, the WERN 2006 model) of multi-state linguistic character evolution that allowed for homoplasy and…
Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization
R. A. L. Elworth, H. A. Ogilvie, J. Zhu +1
Phylogenetic networks extend phylogenetic trees to allow for modeling reticulate evolutionary processes such as hybridization. They take the shape of a rooted, directed, acyclic gr…
In the Light of Deep Coalescence: Revisiting Trees Within Networks
Jiafan Zhu, Yun Yu, Luay Nakhleh
Phylogenetic networks model reticulate evolutionary histories. The last two decades have seen an increased interest in establishing mathematical results and developing computationa…
Interspecific Introgressive Origin of Genomic Diversity in the House Mouse
Kevin J. Liu, Ethan Steinberg, Alexander Yozzo +3
We report on a genome-wide scan for introgression in the house mouse (Mus musculus domesticus) involving the Algerian mouse (Mus spretus), using samples from the ranges of sympatry…
An HMM-based Comparative Genomic Framework for Detecting Introgression in Eukaryotes
Kevin J. Liu, Jingxuan Dai, Kathy Truong +3
One outcome of interspecific hybridization and subsequent effects of evolutionary forces is introgression, which is the integration of genetic material from one species into the ge…
Fast Algorithms for Reconciliation under Hybridization and Incomplete Lineage Sorting
Yun Yu, Luay Nakhleh
Reconciling a gene tree with a species tree is an important task that reveals much about the evolution of genes, genomes, and species, as well as about the molecular function of ge…