88 citations · 319 across the 14 of their papers we have counts for
6 papers · 1 filter
Control of morphology and topology in a lattice model of branching morphogenesis
Christian Hanauer, Frank Jülicher, Efe Ilker
We present a lattice model for morphogen-controlled branching morphogenesis which combines ideas and concepts from non-equilibrium physics and developmental biology. In this model,…
Shortcuts in stochastic systems and control of biophysical processes
Efe Ilker, Özenç Güngör, Benjamin Kuznets-Speck +3
The biochemical reaction networks that regulate living systems are all stochastic to varying degrees. The resulting randomness affects biological outcomes at multiple scales, from…
Controlling the speed and trajectory of evolution with counterdiabatic driving
Shamreen Iram, Emily Dolson, Joshua Chiel +8
The pace and unpredictability of evolution are critically relevant in a variety of modern challenges: combating drug resistance in pathogens and cancer, understanding how species r…
Simulating cw-ESR Spectrum Using Discrete Markov Model of Single Brownian Trajectory
Efe Ilker
Dynamic trajectories can be modeled with a Markov State Model (MSM). The reduction of continuous space coordinates to discretized coordinates can be done by statistical binning pro…
Odd q-State Clock Spin-Glass Models in Three Dimensions, Asymmetric Phase Diagrams, and Multiple Algebraically Ordered Phases
Efe Ilker, A. Nihat Berker
Distinctive orderings and phase diagram structures are found, from renormalization-group theory, for odd q-state clock spin-glass models in d=3 dimensions. These models exhibit asy…
High q-State Clock Spin Glasses in Three Dimensions and the Lyapunov Exponents of Chaotic Phases and Chaotic Phase Boundaries
Efe Ilker, A. Nihat Berker
Spin-glass phases and phase transitions for q-state clock models and their q limit the XY model, in spatial dimension d=3, are studied by a detailed renormaliz…