5 citations · 7 across the 2 of their papers we have counts for
3 papers
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT
Aparna Elangovan, Yuan Li, Douglas E. V. Pires +2
Protein-protein interactions (PPIs) are critical to normal cellular function and are related to many disease pathways. However, only 4% of PPIs are annotated with PTMs in biologica…
Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts
Aparna Elangovan, Melissa Davis, Karin Verspoor
Motivation: Protein-protein interactions (PPI) are critical to the function of proteins in both normal and diseased cells, and many critical protein functions are mediated by inter…
Supervised, semi-supervised and unsupervised inference of gene regulatory networks
Stefan R. Maetschke, Piyush B. Madhamshettiwar, Melissa J. Davis +1
Inference of gene regulatory network from expression data is a challenging task. Many methods have been developed to this purpose but a comprehensive evaluation that covers unsuper…