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Computational analysis of folding and mutation properties of C5 domain from Myosin binding protein C
Carlo Guardiani, Fabio Cecconi, Roberto Livi
Thermal folding Molecular Dynamics simulations of the domain C5 from Myosin Binding Protein C were performed using a native-centric model to study the role of three mutations relat…
Characterizing dynamics with covariant Lyapunov vectors
F. Ginelli, P. Poggi, A. Turchi +3
A general method to determine covariant Lyapunov vectors in both discrete- and continuous-time dynamical systems is introduced. This allows to address fundamental questions such as…
Stability of the splay state in pulse--coupled networks
Rüdiger Zillmer, Roberto Livi, Antonio Politi +1
The stability of the dynamical states characterized by a uniform firing rate ({\it splay states}) is analyzed in a network of globally coupled leaky integrate-and-fire neurons. Thi…
Energy diffusion in hard-point systems
L. Delfini, S. Denisov, S. Lepri +3
We investigate the diffusive properties of energy fluctuations in a one-dimensional diatomic chain of hard-point particles interacting through a square--well potential. The evoluti…
Structure factor and dynamics of the helix-coil transition
H. Kunz, R. Livi, A. Suto
Thermodynamical properties of the helix-coil transition were successfully described in the past by the model of Lifson, Poland and Sheraga. Here we compute the corresponding struct…