8 citations · 17 across the 14 of their papers we have counts for
5 papers · 1 filter
Exact Learning of RNA Energy Parameters From Structure
Hamidreza Chitsaz, Mohammad Aminisharifabad
We consider the problem of exact learning of parameters of a linear RNA energy model from secondary structure data. A necessary and sufficient condition for learnability of paramet…
Distilled Single Cell Genome Sequencing and De Novo Assembly for Sparse Microbial Communities
Zeinab Taghavi, Narjes S. Movahedi, Sorin Draghici +1
Identification of every single genome present in a microbial sample is an important and challenging task with crucial applications. It is challenging because there are typically mi…
On Time-optimal Trajectories for a Car-like Robot with One Trailer
Hamidreza Chitsaz
In addition to the theoretical value of challenging optimal control problmes, recent progress in autonomous vehicles mandates further research in optimal motion planning for wheele…
The RNA Newton Polytope and Learnability of Energy Parameters
Elmirasadat Forouzmand, Hamidreza Chitsaz
Despite nearly two scores of research on RNA secondary structure and RNA-RNA interaction prediction, the accuracy of the state-of-the-art algorithms are still far from satisfactory…
An Efficient Algorithm for Upper Bound on the Partition Function of Nucleic Acids
Hamidreza Chitsaz, Elmirasadat Forouzmand, Gholamreza Haffari
It has been shown that minimum free energy structure for RNAs and RNA-RNA interaction is often incorrect due to inaccuracies in the energy parameters and inherent limitations of th…