474 citations · 891 across the 12 of their papers we have counts for
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physics.bio-ph2013★ 16 cited
A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain
Maksim Kouza, Chin-Kun Hu, Mai Suan Li +1
We discuss the use of a structure based C-Go model and Langevin dynamics to study in detail the mechanical properties and unfolding pathway of the titin I27 domain. We show that…
physics.bio-ph2013★ 22 cited
Combining Coarse-Grained Protein Models with Replica-Exchange All-Atom Molecular Dynamics
Jacek Wabik, Sebastian Kmiecik, Dominik Gront +2
We describe a combination of all-atom simulations with CABS, a well-established coarse-grained protein modeling tool, into a single multiscale protocol. The simulation method has b…
q-bio.BM2013★ 36 cited
ClusCo: clustering and comparison of protein models
Jamróz Michał, Koliński Andrzej
Background: The development, optimization and validation of protein modeling methods require efficient tools for structural comparison. Frequently, a large number of models need to…