activity
20132025
most citedThe variable quality of metadata about biological samples used in biomedical experiments

114 citations · 456 across the 24 of their papers we have counts for

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Showing 2019Show all

7 papers · 1 filter

cs.CL2019★ 19 cited

Use of OWL and Semantic Web Technologies at Pinterest

Rafael S. Gonçalves, Matthew Horridge, Rui Li +6

Pinterest is a popular Web application that has over 250 million active users. It is a visual discovery engine for finding ideas for recipes, fashion, weddings, home decoration, an…

cs.DB2019★ 60 cited

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +4

The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have devel…

cs.DB2019★ 26 cited

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases

Marcos Martínez-Romero, Martin J. O'Connor, Attila L. Egyedi +4

Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in p…

cs.SI2019★ 4 cited

HopRank: How Semantic Structure Influences Teleportation in PageRank (A Case Study on BioPortal)

Lisette Espín-Noboa, Florian Lemmerich, Simon Walk +2

This paper introduces HopRank, an algorithm for modeling human navigation on semantic networks. HopRank leverages the assumption that users know or can see the whole structure of t…

cs.DL2019★ 7 cited

The FAIR Funder pilot programme to make it easy for funders to require and for grantees to produce FAIR Data

P. Wittenburg, H. Pergl Sustkova, A. Montesanti +57

There is a growing acknowledgement in the scientific community of the importance of making experimental data machine findable, accessible, interoperable, and reusable (FAIR). Recog…

cs.IR2019★ 31 cited

WebProtégé: A Cloud-Based Ontology Editor

Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas +2

We present WebProtégé, a tool to develop ontologies represented in the Web Ontology Language (OWL). WebProtégé is a cloud-based application that allows users to collaboratively edi…

cs.CL2019★ 14 cited

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen

The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many way…