60 citations · 151 across the 13 of their papers we have counts for
7 papers · 1 filter
A General-Purpose Data Harmonization Framework: Supporting Reproducible and Scalable Data Integration in the RADx Data Hub
Jimmy K. Yu, Marcos Martínez-Romero, Matthew Horridge +2
In the age of big data, it is important for primary research data to follow the FAIR principles of findability, accessibility, interoperability, and reusability. Data harmonization…
RADx Data Hub: A Cloud Platform for FAIR, Harmonized COVID-19 Data
Marcos Martinez-Romero, Matthew Horridge, Nilesh Mistry +15
The COVID-19 pandemic highlighted the urgent need for robust systems to enable rapid data collection, integration, and analysis for public health responses. Existing approaches oft…
A Change Language for Ontologies and Knowledge Graphs
Harshad Hegde, Jennifer Vendetti, Damien Goutte-Gattat +9
Ontologies and knowledge graphs (KGs) are general-purpose computable representations of some domain, such as human anatomy, and are frequently a crucial part of modern information…
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments
Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +4
The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have devel…
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases
Marcos Martínez-Romero, Martin J. O'Connor, Attila L. Egyedi +4
Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in p…
The variable quality of metadata about biological samples used in biomedical experiments
Rafael S. Gonçalves, Mark A. Musen
We present an analytical study of the quality of metadata about samples used in biomedical experiments. The metadata under analysis are stored in two well-known databases: BioSampl…