5 papers
Spinverse: Differentiable Physics for Permeability-Aware Microstructure Reconstruction from Diffusion MRI
Prathamesh Pradeep Khole, Mario M. Brenes, Zahra Kais Petiwala +5
Diffusion MRI (dMRI) is sensitive to microstructural barriers, yet most existing methods either assume impermeable boundaries or estimate voxel-level parameters without recovering…
ReMiDi: Reconstruction of Microstructure Using a Differentiable Diffusion MRI Simulator
Prathamesh Pradeep Khole, Zahra Kais Petiwala, Shri Prathaa Magesh +5
We propose ReMiDi, a novel method for inferring neuronal microstructure as arbitrary 3D meshes using a differentiable diffusion Magnetic Resonance Imaging (dMRI) simulator. We firs…
Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 1 -- In vivo small-animal imaging
Ileana O Jelescu, Francesco Grussu, Andrada Ianus +54
Small-animal diffusion MRI (dMRI) has been used for methodological development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy.…
Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3 -- Ex vivo imaging: data processing, comparisons with microscopy, and tractography
Kurt G Schilling, Amy FD Howard, Francesco Grussu +55
Preclinical diffusion MRI (dMRI) has proven value in methods development and validation, characterizing the biological basis of diffusion phenomena, and comparative anatomy. While…
Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 2 -- Ex vivo imaging: added value and acquisition
Kurt G Schilling, Francesco Grussu, Andrada Ianus +54
The value of preclinical diffusion MRI (dMRI) is substantial. While dMRI enables in vivo non-invasive characterization of tissue, ex vivo dMRI is increasingly used to probe tissue…