754 citations · 1.5k across the 9 of their papers we have counts for
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q-bio.GN2013★ 120 cited
These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure
Qingpeng Zhang, Jason Pell, Rosangela Canino-Koning +2
K-mer abundance analysis is widely used for many purposes in nucleotide sequence analysis, including data preprocessing for de novo assembly, repeat detection, and sequencing cover…
q-bio.GN2013★ 14 cited
RNA-Seq Mapping Errors When Using Incomplete Reference Transcriptomes of Vertebrates
Alexis Black Pyrkosz, Hans Cheng, C. Titus Brown
Whole transcriptome sequencing is increasingly being used as a functional genomics tool to study non- model organisms. However, when the reference transcriptome used to calculate d…
cs.CE2013★ 15 cited
khmer: Working with Big Data in Bioinformatics
Eric McDonald, C. Titus Brown
We introduce design and optimization considerations for the 'khmer' package.