58 citations · 139 across the 4 of their papers we have counts for
4 papers
Exact Probability Landscapes of Stochastic Phenotype Switching in Feed-Forward Loops: Phase Diagrams of Multimodality
Anna Terebus, Farid Manuchehrfar, Youfang Cao +1
Feed-forward loops (FFLs) are among the most ubiquitously found motifs of reaction networks in nature. However, little is known about their stochastic behavior and the variety of n…
State space truncation with quantified errors for accurate solutions to discrete Chemical Master Equation
Youfang Cao, Anna Terebus, Jie Liang
The discrete chemical master equation (dCME) provides a general framework for studying stochasticity in mesoscopic reaction networks. Since its direct solution rapidly becomes intr…
Accurate Chemical Master Equation Solution Using Multi-Finite Buffers
Youfang Cao, Anna Terebus, Jie Liang
The discrete chemical master equation (dCME) provides a fundamental framework for studying stochasticity in mesoscopic networks. Because of the multi-scale nature of many networks…
Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability
Youfang Cao, Jie Liang
Stochasticity plays important roles in molecular networks when molecular concentrations are in the range of M to M (about 100 to 10 copies in a cell). The chemical mas…