287 citations · 939 across the 24 of their papers we have counts for
27 papers
BELXTR: Biomedical Entity Linking via Contextualized Token Retrieval
Samuele Garda, Ulf Leser
Biomedical Entity Linking disambiguates mentions to entities in a knowledge base (KB), making it the cornerstone of information extraction pipelines. While embedding-based models a…
BELB: a Biomedical Entity Linking Benchmark
Samuele Garda, Leon Weber-Genzel, Robert Martin +1
Biomedical entity linking (BEL) is the task of grounding entity mentions to a knowledge base. It plays a vital role in information extraction pipelines for the life sciences litera…
Validity Constraints for Data Analysis Workflows
Florian Schintke, Ninon De Mecquenem, David Frantz +9
Porting a scientific data analysis workflow (DAW) to a cluster infrastructure, a new software stack, or even only a new dataset with some notably different properties is often chal…
How Workflow Engines Should Talk to Resource Managers: A Proposal for a Common Workflow Scheduling Interface
Fabian Lehmann, Jonathan Bader, Friedrich Tschirpke +2
Scientific workflow management systems (SWMSs) and resource managers together ensure that tasks are scheduled on provisioned resources so that all dependencies are obeyed, and some…
WEASEL 2.0 -- A Random Dilated Dictionary Transform for Fast, Accurate and Memory Constrained Time Series Classification
Patrick Schäfer, Ulf Leser
A time series is a sequence of sequentially ordered real values in time. Time series classification (TSC) is the task of assigning a time series to one of a set of predefined class…
Reshi: Recommending Resources for Scientific Workflow Tasks on Heterogeneous Infrastructures
Jonathan Bader, Fabian Lehmann, Alexander Groth +5
Scientific workflows typically comprise a multitude of different processing steps which often are executed in parallel on different partitions of the input data. These executions,…