26 citations · 94 across the 13 of their papers we have counts for
13 papers
Internal Feedback in Biological Control: Architectures and Examples
Anish A. Sarma, Jing Shuang Li, Josefin Stenberg +5
Feedback is ubiquitous in both biological and engineered control systems. In biology, in addition to typical feedback between plant and controller, we observe feedback pathways wit…
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions
Donglai Wei, Kisuk Lee, Hanyu Li +13
Electron microscopy (EM) enables the reconstruction of neural circuits at the level of individual synapses, which has been transformative for scientific discoveries. However, due t…
Toward an Automated HPC Pipeline for Processing Large Scale Electron Microscopy Data
Rafael Vescovi, Hanyu Li, Jeffery Kinnison +5
We present a fully modular and scalable software pipeline for processing electron microscope (EM) images of brain slices into 3D visualization of individual neurons and demonstrate…
Distributed optimization for nonrigid nano-tomography
Viktor Nikitin, Vincent De Andrade, Azat Slyamov +6
Resolution level and reconstruction quality in nano-computed tomography (nano-CT) are in part limited by the stability of microscopes, because the magnitude of mechanical vibration…
RhoanaNet Pipeline: Dense Automatic Neural Annotation
Seymour Knowles-Barley, Verena Kaynig, Thouis Ray Jones +7
Reconstructing a synaptic wiring diagram, or connectome, from electron microscopy (EM) images of brain tissue currently requires many hours of manual annotation or proofreading (Ka…
Quantifying mesoscale neuroanatomy using X-ray microtomography
Eva L. Dyer, William Gray Roncal, Hugo L. Fernandes +9
Methods for resolving the 3D microstructure of the brain typically start by thinly slicing and staining the brain, and then imaging each individual section with visible light photo…