38 citations · 72 across the 5 of their papers we have counts for
5 papers
Monte Carlo for Protein Structures
Juami H. M. van Gils, Maurits Dijkstra, Halima Mouhib +4
While many good textbooks are available on Protein Structure, Molecular Simulations, Thermodynamics and Bioinformatics methods in general, there is no good introductory level book…
Molecular Dynamics
Halima Mouhib, Juami H. M. van Gils, Jose Gavaldá-Garciá +6
While many good textbooks are available on Protein Structure, Molecular Simulations, Thermodynamics and Bioinformatics methods in general, there is no good introductory level book…
Rigid Base Biasing in Molecular Dynamics enables enhanced sampling of DNA conformations
Aderik Voorspoels, Jocelyne Vreede, Enrico Carlon
All-atom simulations have become increasingly popular to study conformational and dynamical properties of nucleic acids as they are accurate and provide high spatial and time resol…
Length scale dependent elasticity in DNA from coarse-grained and all-atom models
Enrico Skoruppa, Aderik Voorspoels, Jocelyne Vreede +1
The mechanical properties of DNA are typically described by elastic theories with purely local couplings (on-site models). We discuss and analyze coarse-grained (oxDNA) and all-ato…
A model of H-NS mediated compaction of bacterial DNA
Marc Joyeux, Jocelyne Vreede
The Histone-like Nucleoid Structuring protein (H-NS) is a nucleoid-associated protein, which is involved in both gene regulation and DNA compaction. H-NS can bind to DNA in two dif…