82 citations · 110 across the 6 of their papers we have counts for
12 papers · 1 filter
Segmenting two-dimensional structures with strided tensor networks
Raghavendra Selvan, Erik B Dam, Jens Petersen
Tensor networks provide an efficient approximation of operations involving high dimensional tensors and have been extensively used in modelling quantum many-body systems. More rece…
Automated Design of Deep Learning Methods for Biomedical Image Segmentation
Fabian Isensee, Paul F. Jäger, Simon A. A. Kohl +2
Biomedical imaging is a driver of scientific discovery and core component of medical care, currently stimulated by the field of deep learning. While semantic segmentation algorithm…
Segmentation of Roots in Soil with U-Net
Abraham George Smith, Jens Petersen, Raghavendra Selvan +1
Plant root research can provide a way to attain stress-tolerant crops that produce greater yield in a diverse array of conditions. Phenotyping roots in soil is often challenging du…
Graph Refinement based Airway Extraction using Mean-Field Networks and Graph Neural Networks
Raghavendra Selvan, Thomas Kipf, Max Welling +4
Graph refinement, or the task of obtaining subgraphs of interest from over-complete graphs, can have many varied applications. In this work, we extract trees or collection of sub-t…
Learning to quantify emphysema extent: What labels do we need?
Silas Nyboe Ørting, Jens Petersen, Laura H. Thomsen +2
Accurate assessment of pulmonary emphysema is crucial to assess disease severity and subtype, to monitor disease progression and to predict lung cancer risk. However, visual assess…
nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation
Fabian Isensee, Jens Petersen, Andre Klein +8
The U-Net was presented in 2015. With its straight-forward and successful architecture it quickly evolved to a commonly used benchmark in medical image segmentation. The adaptation…