activity
20092026
most citedA new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks

67 citations · 375 across the 47 of their papers we have counts for

collaborators
Showing 2023Show all

9 papers · 1 filter

cs.MS2023★ 1 cited

Integrating Odeint Time Stepping into OpenFPM for Distributed and GPU Accelerated Numerical Solvers

Abhinav Singh, Landfried Kraatz, Serhii Yaskovets +2

We present a software implementation integrating the time-integration library Odeint from Boost with the OpenFPM framework for scalable scientific computing. This enables compact a…

cond-mat.soft2023

Learning locally dominant force balances in active particle systems

Dominik Sturm, Suryanarayana Maddu, Ivo F. Sbalzarini

We use a combination of unsupervised clustering and sparsity-promoting inference algorithms to learn locally dominant force balances that explain macroscopic pattern formation in s…

cs.CE2023★ 6 cited

A high-order fully Lagrangian particle level-set method for dynamic surfaces

Lennart J. Schulze, Sachin K. T. Veettill, Ivo F. Sbalzarini

We present a fully Lagrangian particle level-set method based on high-order polynomial regression. This enables closest-point redistancing without requiring a regular Cartesian mes…

cs.MS2023★ 11 cited

An open-source pipeline for solving continuous reaction-diffusion models in image-based geometries of porous media

Justina Stark, Ivo F. Sbalzarini

We present a versatile open-source pipeline for simulating inhomogeneous reaction-diffusion processes in highly resolved, image-based geometries of porous media with reactive bound…

cs.FL2023

On the Computational Power of Particle Methods

Johannes Pahlke, Ivo F. Sbalzarini

We investigate the computational power of particle methods, a well-established class of algorit hms with applications in scientific computing and computer simulation. The computati…

physics.optics2023★ 9 cited

Roadmap on Deep Learning for Microscopy

Giovanni Volpe, Carolina Wählby, Lei Tian +72

Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasin…

physics.flu-dyn2023★ 6 cited

Entropically damped artificial compressibility for the discretization corrected particle strength exchange method in incompressible fluid mechanics

Abhinav Singh, Ivo F. Sbalzarini, Anas Obeidat

We present a consistent mesh-free numerical scheme for solving the incompressible Navier-Stokes equations. Our method is based on entropically damped artificial compressibility for…

physics.comp-ph2023★ 56 cited

Adaptive weighting of Bayesian physics informed neural networks for multitask and multiscale forward and inverse problems

Sarah Perez, Suryanarayana Maddu, Ivo F. Sbalzarini +1

In this paper, we present a novel methodology for automatic adaptive weighting of Bayesian Physics-Informed Neural Networks (BPINNs), and we demonstrate that this makes it possible…

cond-mat.soft2023★ 14 cited

Spontaneous flow instabilities of active polar fluids in three dimensions

Abhinav Singh, Quentin Vagne, Frank Jülicher +1

Active polar fluids exhibit spontaneous flow when sufficient active stress is generated by internal molecular mechanisms. This is also referred to as an active Fréedericksz transit…