33 citations · 76 across the 14 of their papers we have counts for
5 papers · 1 filter
Permutation theory governs long-term dynamics of critical Boolean networks
Venkata Sai Narayana Bavisetty, Matthew Wheeler, Julian Vignes +4
Boolean networks are widely used to model gene regulatory Attractors of Boolean networks model stable gene-expression patterns, yet deriving their properties from network structure…
BoolForge: Controlled Generation and Analysis of Boolean Functions and Networks
Claus Kadelka, Benjamin Coberly
Boolean networks are a widely used modeling framework in systems biology for studying gene regulation, signal transduction, and cellular decision-making. Empirical studies indicate…
Upper bound for the stability of Boolean networks
Venkata Sai Narayana Bavisetty, Matthew Wheeler, Reinhard Laubenbacher +1
Boolean networks, inspired by gene regulatory networks, were developed to understand the complex behaviors observed in biological systems, with network attractors corresponding to…
Modular control of Boolean network models
David Murrugarra, Alan Veliz-Cuba, Elena Dimitrova +3
The concept of control is crucial for effectively understanding and applying biological network models. Key structural features relate to control functions through gene regulation,…
Stabilizing Gene Regulatory Networks Through Feedforward Loops
Claus Kadelka, David Murrugarra, Reinhard Laubenbacher
The global dynamics of gene regulatory networks are known to show robustness to perturbations in the form of intrinsic and extrinsic noise, as well as mutations of individual genes…