activity
20132021
most citedHigh-speed and accurate color-space short-read alignment with CUSHAW2

1 citations · 1 across the 3 of their papers we have counts for

collaborators

5 papers

cs.IR2021

Path-based Deep Network for Candidate Item Matching in Recommenders

Houyi Li, Zhihong Chen, Chenliang Li +5

The large-scale recommender system mainly consists of two stages: matching and ranking. The matching stage (also known as the retrieval step) identifies a small fraction of relevan…

cs.LG2021

GIPA: General Information Propagation Algorithm for Graph Learning

Qinkai Zheng, Houyi Li, Peng Zhang +4

Graph neural networks (GNNs) have been popularly used in analyzing graph-structured data, showing promising results in various applications such as node classification, link predic…

cs.DC2020

Woodpecker-DL: Accelerating Deep Neural Networks via Hardware-Aware Multifaceted Optimizations

Yongchao Liu, Yue Jin, Yong Chen +4

Accelerating deep model training and inference is crucial in practice. Existing deep learning frameworks usually concentrate on optimizing training speed and pay fewer attentions t…

cs.DC2016

LightScan: Faster Scan Primitive on CUDA Compatible Manycore Processors

Yongchao Liu, Srinivas Aluru

Scan (or prefix sum) is a fundamental and widely used primitive in parallel computing. In this paper, we present LightScan, a faster parallel scan primitive for CUDA-enabled GPUs,…

q-bio.GN20131 cited

High-speed and accurate color-space short-read alignment with CUSHAW2

Yongchao Liu, Bernt Popp, Bertil Schmidt

Summary: We present an extension of CUSHAW2 for fast and accurate alignments of SOLiD color-space short-reads. Our extension introduces a double-seeding approach to improve mapping…