145 citations · 227 across the 7 of their papers we have counts for
3 papers · 1 filter
BEETL-fastq: a searchable compressed archive for DNA reads
Lilian Janin, Ole Schulz-Trieglaff, Anthony J. Cox
Motivation: FASTQ is a standard file format for DNA sequencing data which stores both nucleotides and quality scores. A typical sequencing study can easily generate hundreds of gig…
Adaptive reference-free compression of sequence quality scores
Lilian Janin, Giovanna Rosone, Anthony J. Cox
Motivation: Rapid technological progress in DNA sequencing has stimulated interest in compressing the vast datasets that are now routinely produced. Relatively little attention has…
Comparing DNA sequence collections by direct comparison of compressed text indexes
Anthony J. Cox, Tobias Jakobi, Giovanna Rosone +1
Popular sequence alignment tools such as BWA convert a reference genome to an indexing data structure based on the Burrows-Wheeler Transform (BWT), from which matches to individual…