742 citations · 807 across the 9 of their papers we have counts for
3 papers · 1 filter
Processing-in-memory for genomics workloads
William Andrew Simon, Leonid Yavits, Konstantina Koliogeorgi +12
Low-cost, high-throughput DNA and RNA sequencing (HTS) data is the backbone of the life sciences. Genome sequencing is now becoming a part of Predictive, Preventive, Personalized,…
Informed and Automated k-Mer Size Selection for Genome Assembly
Rayan Chikhi, Paul Medvedev
Genome assembly tools based on the de Bruijn graph framework rely on a parameter k, which represents a trade-off between several competing effects that are difficult to quantify. T…
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
Keith R. Bradnam, Joseph N. Fass, Anton Alexandrov +88
Background - The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished g…