6 citations · 16 across the 4 of their papers we have counts for
5 papers
A step towards neural genome assembly
Lovro Vrček, Petar Veličković, Mile Šikić
De novo genome assembly focuses on finding connections between a vast amount of short sequences in order to reconstruct the original genome. The central problem of genome assembly…
Read classification using semi-supervised deep learning
Tomislav Šebrek, Jan Tomljanović, Josip Krapac +1
In this paper, we propose a semi-supervised deep learning method for detecting the specific types of reads that impede the de novo genome assembly process. Instead of dealing direc…
MinCall - MinION end2end convolutional deep learning basecaller
Neven Miculinić, Marko Ratković, Mile Šikić
The Oxford Nanopore Technologies's MinION is the first portable DNA sequencing device. It is capable of producing long reads, over 100 kBp were reported. However, it has significan…
Disentangling sources of influence in online social networks
Matija Piškorec, Tomislav Šmuc, Mile Šikić
Information propagation in online social networks is facilitated by two types of influence - endogenous (peer) influence that acts between users of the social network and exogenous…
SW# - GPU enabled exact alignments on genome scale
Matija Korpar, Mile Sikic
Sequence alignment is one of the oldest and the most famous problems in bioinformatics. Even after 45 years, for one reason or another, this problem is still actual; current soluti…