2 papers
stat.ME2026
Amortized Phylodynamic Inference with Neural Bayes Estimators and Recursive Neural Networks
Alexander E. Zarebski, Thomas Williams, Louis du Plessis
Phylodynamics is used to estimate epidemic dynamics from phylogenetic trees or genomic sequences of pathogens, but the likelihood calculations needed can be challenging for complex…
q-bio.PE2025
A hybrid framework for compartmental models enabling simulation-based inference
Domenic P. J. Germano, Alexander E. Zarebski, Sophie Hautphenne +3
Multi-scale systems often exhibit a combination of stochastic and deterministic dynamics. In compartmental models, low occupancy compartments tend to exhibit stochastic dynamics wh…