6 papers
Beyond Attention Heatmaps: How to Get Better Explanations for Multiple Instance Learning Models in Histopathology
Mina Jamshidi Idaji, Julius Hense, Tom Neuhäuser +12
Multiple instance learning (MIL) has enabled substantial progress in computational histopathology, where a large amount of patches from gigapixel whole slide images are aggregated…
Atlas 2 -- Foundation models for clinical deployment
Maximilian Alber, Timo Milbich, Alexandra Carpen-Amarie +24
Pathology foundation models substantially advanced the possibilities in computational pathology --- yet tradeoffs in terms of performance, robustness, and computational requirement…
Towards Robust Foundation Models for Digital Pathology
Jonah Kömen, Edwin D. de Jong, Julius Hense +9
Biomedical Foundation Models (FMs) are rapidly transforming AI-enabled healthcare research and entering clinical validation. However, their susceptibility to learning non-biologica…
MeDi: Metadata-Guided Diffusion Models for Mitigating Biases in Tumor Classification
David Jacob Drexlin, Jonas Dippel, Julius Hense +4
Deep learning models have made significant advances in histological prediction tasks in recent years. However, for adaptation in clinical practice, their lack of robustness to vary…
Atlas: A Novel Pathology Foundation Model by Mayo Clinic, Charité, and Aignostics
Maximilian Alber, Stephan Tietz, Jonas Dippel +24
Recent advances in digital pathology have demonstrated the effectiveness of foundation models across diverse applications. In this report, we present Atlas, a novel vision foundati…
xMIL: Insightful Explanations for Multiple Instance Learning in Histopathology
Julius Hense, Mina Jamshidi Idaji, Oliver Eberle +7
Multiple instance learning (MIL) is an effective and widely used approach for weakly supervised machine learning. In histopathology, MIL models have achieved remarkable success in…