1 citations · 1 across the 5 of their papers we have counts for
5 papers
ViDa: Visualizing DNA hybridization trajectories with biophysics-informed deep graph embeddings
Chenwei Zhang, Jordan Lovrod, Boyan Beronov +2
Visualization tools can help synthetic biologists and molecular programmers understand the complex reactive pathways of nucleic acid reactions, which can be designed for many poten…
Visualizing DNA reaction trajectories with deep graph embedding approaches
Chenwei Zhang, Khanh Dao Duc, Anne Condon
Synthetic biologists and molecular programmers design novel nucleic acid reactions, with many potential applications. Good visualization tools are needed to help domain experts mak…
EMPOT: partial alignment of density maps and rigid body fitting using unbalanced Gromov-Wasserstein divergence
Aryan Tajmir Riahi, Chenwei Zhang, James Chen +2
Aligning EM density maps and fitting atomic models are essential steps in single particle cryogenic electron microscopy (cryo-EM), with recent methods leveraging various algorithms…
Factorization and pseudofactorization of weighted graphs
Kristin Sheridan, Joseph Berleant, Mark Bathe +2
For unweighted graphs, finding isometric embeddings is closely related to decompositions of into Cartesian products of smaller graphs. When is isomorphic to a Cartesian gra…
The complexity of string partitioning
Anne Condon, Ján Maňuch, Chris Thachuk
Given a string over a finite alphabet and an integer , can be partitioned into strings of length at most , such that there are no \emph{collisions}? We refer to t…