3 papers
q-bio.QM2026
Whole slide and microscopy image analysis with QuPath and OMERO
Léo Leplat, Alan O'Callaghan, Peter Bankhead
QuPath is open-source software for bioimage analysis. As a desktop application that is flexible and easy to install, QuPath is used by labs worldwide to visualise and analyse large…
q-bio.OT2025
MIFA: Metadata, Incentives, Formats, and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis
Teresa Zulueta-Coarasa, Florian Jug, Aastha Mathur +24
Artificial Intelligence methods are powerful tools for biological image analysis and processing. High-quality annotated images are key to training and developing new methods, but a…
cs.CV2024
InstanSeg: an embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation
Thibaut Goldsborough, Ben Philps, Alan O'Callaghan +5
Cell and nucleus segmentation are fundamental tasks for quantitative bioimage analysis. Despite progress in recent years, biologists and other domain experts still require novel al…