3 papers
cs.DS2021
Burrows Wheeler Transform on a Large Scale: Algorithms Implemented in Apache Spark
Ylenia Galluzzo, Raffaele Giancarlo, Mario Randazzo +1
With the rapid growth of Next Generation Sequencing (NGS) technologies, large amounts of "omics" data are daily collected and need to be processed. Indexing and compressing large s…
q-bio.GN2021
The Power of Word-Frequency Based Alignment-Free Functions: a Comprehensive Large-scale Experimental Analysis -- Version 3
Giuseppe Cattaneo, Umberto Ferraro Petrillo, Raffaele Giancarlo +2
Motivation: Alignment-free (AF) distance/similarity functions are a key tool for sequence analysis. Experimental studies on real datasets abound and, to some extent, there are also…
q-bio.GN2012
The Chromatin Organization of an Eukaryotic Genome : Sequence Specific+ Statistical=Combinatorial (Extended Abstract)
Davide Corona, Valeria Di Benedetto, Raffaele Giancarlo +1
Nucleosome organization in eukaryotic genomes has a deep impact on gene function. Although progress has been recently made in the identification of various concurring factors influ…