3 papers
cs.CE2026
A full software stack for epidemic disease management: Unlocking the joint potential of software technology and supercomputing
Jonas Gilg, Johann Fredrik Jadebeck, Mariama Jaiteh +22
Infectious diseases remain a major threat to human societies. During the recent COVID-19 pandemic, mathematical modeling and extensive computer simulations proved highly effective…
cs.AI2026
Simulation-based inference for rapid Bayesian parameter estimation in epidemiological models: a comparison with MCMC
Alina Bazarova, Johann Fredrik Jadebeck, Henrik Zunker +5
Mechanistic epidemiological models are widely used to support infectious disease forecasting and public-health decision making. Bayesian calibration of such models is commonly perf…
q-bio.QM2025
13CFLUX -- Third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis
Anton Stratmann, Martin BeyÃ, Johann F. Jadebeck +2
13C-based metabolic flux analysis (13C-MFA) is a cornerstone of quantitative systems biology, yet its increasing data complexity and methodological diversity place high demands on…